UNM Data Science Seminar Series
🚀 Join Our Monthly Data Science & AI Research Forum
The DS Research in Progress (RiP) Seminar Series, a monthly seminar designed for researchers—including faculty, staff, and students—interested in data science and AI. This virtual forum is for sharing ongoing research, receiving peer feedback, and cross-campus collaboration between Main and North Campus researchers at UNM.
đź’ˇ Goal?
🔹 Present & Refine: Share your research, get feedback, and strengthen your work.
🔹 Collaborate & Connect: Engage with experts in data science, AI, and computation.
Subscribe to our mailing list (Google Account Required): Google Group
 If you do not have a Google account or wish to present your research, please contact: David Arredondo: darredondo@salud.unm.edu Michael Servilla: chico@unm.edu
When? Second Thursday of every month at 3 PM (MT)
Join via Zoom: Click Here
Meeting ID: 937 7073 0211
Passcode: ds-rip
Feb 13 2025 : Dr. Ang Li, Assistant Professor of Medicine in Hematology & Oncology at Baylor College of Medicine
VTE-BERT, a large language model for identifying venous thromboembolism (VTE) using clinical notes and radiology reports.
Nov 2024 : Dr. David Arredondo, Â Postdoc Research Fellow, UNMCCCÂ
Language Model for the Tumor Genome
Sept 2024 : Dr. Kushal Virupakshappa,  Postdoc Research Fellow, UNMCCCÂ
AI-based detection of solar elastosis—a severe sunburn condition—from histology, and its implications for melanomaÂ
Courses: CS 551, BME 598 & BIOM 505
This course, tailored for PhD students, explore AI and scientific research, with a focus on biomedical applications. The spring semester will concentrate on multi-modal data AI models, covering seven key areas:
Autoencoders and Variational Autoencoders
Data Fusion
Graph Neural Networks
Transformers and Other Attention Models
Cross-modal Attention, Contrastive Learning, and other Multi-modal Approaches
Q-learningÂ
Application of Transformers in Biology Special emphasis is on Foundation Models.
The aim is to provide students with an understanding of these AI technologies and their practical use.
MEETING TIMES
Wednesday 12:00 to 2:00 PM MST Online via ZOOM
Passcode: 285110
Meeting ID: 927 4587 5372
Week 1
Date: Jan 17th
Papers Covered:Â
Transformers in Vision: A Survey
Presenter: Shane McQueen
Zoom Recording: Video Link (Passcode: kj703+ev )
Week 2
Date: Jan 24th
Paper Covered:Â
An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale
Presenter: Kushal Virupakshappa
Zoom Recording: Video Link (Passcode: 1$F=dp6o )
Week 3
Date: Jan 31st
Paper Covered: ChemBERTa: Large-Scale Self-Supervised Pre-training for Molecular Property Prediction
Presenter: Mikaela E Dicome
Zoom Recording: To be uploaded
Week 4
Date: Feb 14th
Paper Covered: ProteinBERT: a universal deep-learning model of protein sequence and functionÂ
Presenter: Â David A Arredondo
Zoom Recording: To be uploaded
Week 5
Date: Feb 21st
Paper Covered: Hard negative examples are hard, but useful.
Presenter:Â Micheal Serivilla
Zoom Recording: To be uploaded
Week 6
Date: Feb 27th
Paper Covered: Variational Auto Encoder
Presenter:Â Macaulay
Zoom Recording: To be uploaded
Week 7
Date: Mar 6th
Paper Covered: Machine learning to detect the SINEs of cancer
Presenter:Â Olufunmilola M Oyebamiji
Zoom Recording: video (Passcode: nss.mj1g)
Week 8
Date: Mar 13th
Paper Covered: TBD
Presenter: YueÂ
Zoom Recording: To be uploaded
Token quanitzation
Date: July 17
Paper Covered: VQ-VAE : https://arxiv.org/pdf/1711.00937
VQGAN:https://arxiv.org/abs/2012.09841Â
MaskGIT : https://arxiv.org/abs/2202.04200
TiTok : https://arxiv.org/pdf/2406.07550
Presenter: AviÂ
Zoom Recording: https://hsc-unm.zoom.us/rec/share/rFXJhnpBQeaDVfREskVrsyuU80e8BU-WOvEa2miD-Y9H1qmNID4CiDZ5QvUW9bdw.Gu_VzZLp5FxYh9U1